I assume close combat will represent Phasers, and ranged combat will be for Torpedoes. So that said, here is what I can come up with:

Flurry = Phaser Cannons (Defiant)
Phasing/Teleport = Transwarp Drive/Artificial Wormhole Generator
Charge = Attack Patter Alpha
Mind Control = Computer Hack
Plasticity = Tractor Beam/Grapples
Force Blast = Deflector Pulse
Hypersonic Speed = Strafing Run
Stealth = Cloak
Running Shot = Attack Pattern Beta
B/C/F = Boarding Party
Energy Explosion = Photon Torpedoes
Pulse Wave = Warp Core Overload
Quake = Gravimetric Pulse
Super Strength = Transporters
Incapacitate = Target Engines
Psychic Blast = Shield Penetration
Smoke Cloud = Vent Gas
Poison = Feedback Pulse
Steal Energy = Siphon Energy
Telekinesis = Tractor Beams
Super Senses = Sensors
Toughness = Ablative Armor
Invulnerability = Shields
Impervious = Advanced Shields
Defend = Extend Shields
Combat Reflexes = Evasive Maneuvers
ES/D = Full power to shields
Barrier = Mines?
Mastermind = Fleet Flagship
Willpower = Efficient Crew
Regeneration = Reroute Power
Quantum Torpedoes = Ranged Combat Expert
Battle Fury = Prepare for Ramming Speed!
Support = Provide Assistance
Exploit Weakness = Modulate Phasers
Enhancement = Co-ordinated Attack
Probability Control = Empathic/Telepathic Crew
Shape Change = Holographic disguise
Close Combat Expert = Full power to Phasers
Perplex = Scientific Analysis
Outwit = Disable Systems
Leadership = Renowned Captain

Ummm, just going by the starship classes (and there are often multiple ships in each class) there's over 200 listed on Memory Alpha.

This site has a fairly comprehensive list of them. Looks like hundreds:

http://starchive.cs.umanitoba.ca/?ships/federation

Hey, if they ever do the main characters, we'll be one step closer to being able to do the Xmen/Star Trek and the Legion of Super Heroes/ Star Trek crossovers.

(which the 2nd one just started this month, for you Trekkees that wanna check it out.)

Seperate games.

Alas my dreams of saying "And Monkey Joe bases the Klingons" shall forever be consigned to home play.

Finally my dream of having Captain America beat the snot out of the U.S.S. Enterprise will be realized

I don't care if Trek Clix is compatible or not, I just want to hold one up and say "It's a faaaaaake!"

Me, I want to battle cylons.

Kurt vs. Adama or have Stardoe kick the snot out of Number One, man I couldn't stand Number One. Now that would be some fun.

But for now Vulcans and Klingons will have to do.

Birds of Prey are very cool,


AUKOS

this is weird as hell, but if it means more expansions with more factions in the future, I'm all for it~!

This reminds me of the scene in the book Hitchhiker's Guide to the Galaxy (and the computer game) where an alien battle fleet travels to Earth only to be accidentally eaten by a small dog, due to a terrible miscalculation of scale...

I wonder if they'll have the Transporter ability.

I'd be kinda disappointed if the "tactics" ships were completely incompatible with Fleet Captains. I still haven't gotten Fleet Captains Yet, but I had plans to.

Maybe if the dials aren't compatible, at least the maps and missions would be? I hope so at least.

A thought occurs: what if Movie Thor KOs the USS Kelvin?

I feel the same about GoW and LotR... and still on the fence about Halo... bought a booster, not that impressed... there needs to be boundaries... Im all for Street Fighter, at least that has SOME tie to comics... but Trekkies need to GTFO!

several heroclix powers deemed useless.. how can a spaceship have superstrengh? or leap climb?

they will assimilate into clix they will..
resistance is futile...

It'll probably use the same color and same general idea with a new name.

So Leap/Climb will be like... Master Helmsman/Stellar Cartography.

Which will mean the ship isn't effected by "terrain", in this case areas of space that will slow down your ship. Such as Black Holes or the like.