When you use a transporter's move and shoot ability will your attack always have the negative 2 modifier because reading the insert it seemed a little blurry. That perhaps if you attack before or at the end of the move action you didn't get the modifer. Thanks for any clarification.

If you use the move and attack ability of a Transporter, you will always have the penalty to your Attack Value. You can offset the penalty with other modifiers, like Perplex, even eliminate it if you have enough modifiers, but there is no way to avoid it outright.